{"id":1305,"date":"2024-06-17T01:22:34","date_gmt":"2024-06-17T01:22:34","guid":{"rendered":"https:\/\/research.iium.edu.my\/rubic\/?p=1305"},"modified":"2024-06-17T01:24:53","modified_gmt":"2024-06-17T01:24:53","slug":"workshop-on-protein-simulation-binding-free-energy-using-molecular-mechanics-poisson-boltzmann-surface-area-mmpbsa-method","status":"publish","type":"post","link":"https:\/\/research.iium.edu.my\/rubic\/?p=1305","title":{"rendered":"Workshop on Protein Simulation &#038; Binding Free Energy using Molecular Mechanics Poisson-Boltzmann Surface Area (MMPBSA) Method"},"content":{"rendered":"\n<p><\/p>\n\n\n\n<p class=\"has-medium-font-size\">Calling all students, researchers, and scientists! Join our workshop led by experts in Structural Bioinformatics. Gain practical skills in biomolecular modeling, simulation, and data analysis with personalized guidance. Explore molecular docking and protein simulations on both Windows and Linux platforms, receiving expert support for software installation and technical assistance. Don&#8217;t miss this chance to enhance your skills\u2014bring your own laptop!<br><br>In our workshop, you&#8217;ll master these skills:<br>\u2022 Conduct proteins and ligands docking using the SeamDock interactive webserver powered by Autodock Vina.<br>\u2022 Parameterize protein-ligand complexes with CHARMM_GUI.<br>\u2022 Set up and execute MD simulations using GROMACS software.<br>\u2022 Analyze protein-ligand interactions and process trajectories with Grace and VMD Software.<br>\u2022 Calculate Binding Free Energy using MMPBSA\/MMGBSA techniques.<br>\u2022 Create illustrative images for publication using VMD and PyMol.<br><br>Join us now<br><a href=\"https:\/\/lnkd.in\/gyqJ-tiw\">https:\/\/lnkd.in\/gyqJ-tiw<\/a><\/p>\n\n\n\n<div class=\"wp-block-columns is-layout-flex wp-container-4 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\" style=\"flex-basis:100%\">\n<figure class=\"wp-block-gallery has-nested-images columns-default is-cropped wp-block-gallery-1 is-layout-flex wp-block-gallery-is-layout-flex\">\n<figure class=\"wp-block-image size-large\"><img decoding=\"async\" loading=\"lazy\" width=\"1414\" height=\"2000\" src=\"https:\/\/research.iium.edu.my\/rubic\/wp-content\/uploads\/2024\/06\/4-724x1024.png\" alt=\"\" class=\"wp-image-1307\" srcset=\"https:\/\/research.iium.edu.my\/rubic\/wp-content\/uploads\/2024\/06\/4-724x1024.png 724w, https:\/\/research.iium.edu.my\/rubic\/wp-content\/uploads\/2024\/06\/4-212x300.png 212w, https:\/\/research.iium.edu.my\/rubic\/wp-content\/uploads\/2024\/06\/4-768x1086.png 768w, https:\/\/research.iium.edu.my\/rubic\/wp-content\/uploads\/2024\/06\/4-1086x1536.png 1086w, https:\/\/research.iium.edu.my\/rubic\/wp-content\/uploads\/2024\/06\/4.png 1414w\" sizes=\"(max-width: 1414px) 100vw, 1414px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img decoding=\"async\" loading=\"lazy\" width=\"724\" height=\"1024\" src=\"https:\/\/research.iium.edu.my\/rubic\/wp-content\/uploads\/2024\/06\/5-724x1024.png\" alt=\"\" class=\"wp-image-1308\" srcset=\"https:\/\/research.iium.edu.my\/rubic\/wp-content\/uploads\/2024\/06\/5-724x1024.png 724w, https:\/\/research.iium.edu.my\/rubic\/wp-content\/uploads\/2024\/06\/5-212x300.png 212w, https:\/\/research.iium.edu.my\/rubic\/wp-content\/uploads\/2024\/06\/5-768x1086.png 768w, https:\/\/research.iium.edu.my\/rubic\/wp-content\/uploads\/2024\/06\/5-1086x1536.png 1086w, https:\/\/research.iium.edu.my\/rubic\/wp-content\/uploads\/2024\/06\/5.png 1414w\" sizes=\"(max-width: 724px) 100vw, 724px\" \/><\/figure>\n<\/figure>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Calling all students, researchers, and scientists! Join our workshop led by experts in Structural Bioinformatics. Gain practical skills in biomolecular modeling, simulation, and data analysis with personalized guidance. Explore molecular docking and protein simulations on both Windows and Linux platforms, receiving expert support for software installation and technical assistance. Don&#8217;t [&hellip;]<\/p>\n","protected":false},"author":3,"featured_media":1306,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[1],"tags":[],"_links":{"self":[{"href":"https:\/\/research.iium.edu.my\/rubic\/index.php?rest_route=\/wp\/v2\/posts\/1305"}],"collection":[{"href":"https:\/\/research.iium.edu.my\/rubic\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/research.iium.edu.my\/rubic\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/research.iium.edu.my\/rubic\/index.php?rest_route=\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/research.iium.edu.my\/rubic\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=1305"}],"version-history":[{"count":2,"href":"https:\/\/research.iium.edu.my\/rubic\/index.php?rest_route=\/wp\/v2\/posts\/1305\/revisions"}],"predecessor-version":[{"id":1311,"href":"https:\/\/research.iium.edu.my\/rubic\/index.php?rest_route=\/wp\/v2\/posts\/1305\/revisions\/1311"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/research.iium.edu.my\/rubic\/index.php?rest_route=\/wp\/v2\/media\/1306"}],"wp:attachment":[{"href":"https:\/\/research.iium.edu.my\/rubic\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=1305"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/research.iium.edu.my\/rubic\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=1305"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/research.iium.edu.my\/rubic\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=1305"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}