{"id":192,"date":"2020-01-28T01:22:34","date_gmt":"2020-01-28T01:22:34","guid":{"rendered":"https:\/\/rubiciium.wordpress.com\/?page_id=192"},"modified":"2025-12-18T01:46:23","modified_gmt":"2025-12-18T01:46:23","slug":"rubic-scientific-publications","status":"publish","type":"page","link":"https:\/\/research.iium.edu.my\/rubic\/?page_id=192","title":{"rendered":"Our publication"},"content":{"rendered":"\n

2026<\/p>\n\n\n\n

    \n
  1. Xanthorrhizol derivatives as hyaluronidase inhibitors:\u00a0In silico<\/em>\u00a0fragment-based drug design,\u00a0in vitro<\/em>\u00a0evaluation and molecular dynamics simulations<\/a><\/li>\n\n\n\n
  2. Computational and experimental approaches to metal sequestration in\u00a0Perna viridis<\/em>\u00a0using sodium gluconate and alumina catalyst<\/li>\n<\/ol>\n\n\n\n

    2025<\/p>\n\n\n\n

      \n
    1. M630l Mutation Disrupts the Structure Conformation of Bruton Tyrosine Kinase (BTK) Domain in Patient with X-Linked Agammaglobulinemia: Insights from In Silico<\/a><\/li>\n\n\n\n
    2. Unlocking the potential of in silico<\/em> approach in designing antibodies against SARS-CoV-2<\/a><\/li>\n\n\n\n
    3. Paradoxical action of zolpidem: interplay between dysregulation of the synergetic actions of \u03b3-aminobutyric acid type A receptors and neuronal cotransporters (KCC2\/NKCC1)<\/a><\/li>\n\n\n\n
    4. Investigation of Curcumin Analogs by Molecular Docking, MD Simulation and MM-PBSA Calculation as potzential GSK3-\u03b2 Protein Inhibitor to Treat Wounds<\/a><\/li>\n\n\n\n
    5. Exploring the role of zolpidem in alleviating cognitive and motor impairments in chronic cerebral hypoperfusion: a rat model study with in vivo and in silico insights<\/a><\/li>\n\n\n\n
    6. In-silico, in-vitro,<\/em> and proteomics analyses on repurposed drugs in targeting the small GTPase, Rho subfamily protein (Rho GTPase), and putative Rho GTPase-activating protein (RhoGAP) of Giardia lamblia<\/em><\/a><\/li>\n\n\n\n
    7. A Molecular Docking Study on Anti-cariogenic Properties of Theaflavins against Streptococcus mutans<\/a><\/li>\n\n\n\n
    8. A Computational Workflow for Membrane Protein\u2013Ligand Interaction Studies: Focus on \u03b15-Containing GABA (A) Receptors<\/a><\/li>\n\n\n\n
    9. A Step-by-Step Computational Protocol for Functional Annotation and Structural Modelling of Insect Chemosensory Proteins<\/a><\/li>\n<\/ol>\n\n\n\n

      2024<\/p>\n\n\n\n

        \n
      1. Baseline amplicon sequencing data for the internal transcribed spacer 2 region in the green honey of Banggi Island, Sabah<\/a><\/li>\n\n\n\n
      2. Molecular docking and dynamics simulation studies uncover the host-pathogen protein-protein interactions in Penaeus vannamei and Vibrio parahaemolyticus<\/a><\/li>\n\n\n\n
      3. An ensemble docking-based virtual screening and molecular dynamics simulation of phytochemical compounds from Malaysian Kelulut Honey (KH) against SARS-CoV-2 target enzyme, human angiotensin-converting enzyme 2 (ACE-2)<\/a><\/li>\n\n\n\n
      4. Evaluation on the Potential of Ganoderma lucidum Bioactive Compounds as Alpha-Glucosidase Enzyme Inhibitor: A Computational Study.<\/a><\/li>\n\n\n\n
      5. Molecular docking and dynamics simulation reveal withanolides as potent antivirals against dengue virus<\/a><\/li>\n\n\n\n
      6. The first ITS1 profiling of honey samples from the Southeast Asian region Lombok, Bali and Banggi Island<\/a>https:\/\/www.nature.com\/articles\/s41598-024-64838-3<\/a><\/li>\n\n\n\n
      7. Metagenomic analysis of bacterial communities in heavy metal leachate-contaminated soils at Jalan Lipis Sanitary Landfill, Pahang, Malaysia<\/a><\/li>\n\n\n\n
      8. Three-Dimensional Structure of Human Epididymis Protein 4 (HE4): A Protein Modelling of an Ovarian Cancer Biomarker Through In SilicoApproach<\/a><\/li>\n\n\n\n
      9. DNA aptamers: The Game-Changers in Diagnostics<\/a><\/li>\n\n\n\n
      10. Molecular Recognition of Polyaromatic Hydrocarbons (PAHs) by Naphthalene Dioxygenase through the Action of Rhamnolipid<\/a><\/li>\n<\/ol>\n\n\n\n

        2023<\/p>\n\n\n\n

          \n
        1. Interaction of the nanobio-based reagent with sodium fluorescein and lipids via<\/em> bioinformatics for forensic fingerprint visualisations<\/a><\/li>\n\n\n\n
        2. In silico<\/em> Study of Thiourea Derivatives as Potential Epidermal Growth Factor Receptor Inhibitors<\/a><\/li>\n\n\n\n
        3. Metal uptake and tolerance in hyperaccumulator plants: Advancing phytomining strategies<\/a><\/li>\n\n\n\n
        4. Homology modeling of human BAP1 and analysis of its binding properties through molecular docking and molecular dynamics simulation<\/a><\/li>\n<\/ol>\n\n\n\n

          2022<\/p>\n\n\n\n

            \n
          1. P-glycoprotein: new insights into structure, physiological function, regulation and alterations in disease<\/a><\/li>\n\n\n\n
          2. Molecular interactions of trichoderma \u03b2-1,4-glucosidase (ThBglT12) with mycelial cell wall components of phytopathogenic Macrophomina phaseolina<\/em><\/a><\/li>\n\n\n\n
          3. Homology modeling of human BAP1 and analysis of its binding properties through molecular docking and molecular dynamics simulation<\/a><\/li>\n\n\n\n
          4. Computational Studies of Potential Ebola Vp40 Inhibitors using Bioactive Compounds from Medicinal Plants Of Malaysia<\/a><\/a><\/li>\n<\/ol>\n\n\n\n

            2021 <\/p>\n\n\n\n

              \n
            1. Vaccines | Free Full-Text | HSV-1 ICP22 Is a Selective Viral Repressor of Cellular RNA Polymerase II-Mediated Transcription Elongation<\/a><\/li>\n\n\n\n
            2. Molecular docking and molecular dynamics simulations of a mutant Acinetobacter haemolyticus<\/em> alkaline-stable lipase against tributyrin<\/a><\/li>\n\n\n\n
            3. Polyhydroxyalkanoates (PHA)-based responsive polymers<\/a><\/li>\n\n\n\n
            4. Molecular docking and molecular dynamics simulations studies on \u03b2-glucosidase and xylanase Trichoderma asperellum<\/em> to predict degradation order of cellulosic \u2026<\/a><\/li>\n\n\n\n
            5. Virtual Screening for Potential Inhibitors of Human Hexokinase II for the Development of Anti-Dengue Therapeutics<\/a><\/li>\n<\/ol>\n\n\n\n

              2020<\/p>\n\n\n\n

                \n
              1. In Silico Structural and Functional Annotation of Nine Essential Hypothetical Proteins from Streptococcus pneumoniae<\/a><\/li>\n\n\n\n
              2. Substrate docking and molecular dynamic simulation for prediction of fungal enzymes from Trichoderma<\/em> species-assisted extraction of nanocellulose from oil palm \u2026<\/a><\/li>\n\n\n\n
              3. De novo transcriptome dataset of Stevia rebaudiana accession MS007<\/a><\/li>\n\n\n\n
              4. Comparative modelling studies of fruit bromelain using molecular dynamics simulation.<\/a><\/li>\n\n\n\n
              5. Orthologous Revelation between Elaeis guineensis, Arabidopsis thaliana and Solanum lycopersicum<\/a><\/li>\n\n\n\n
              6. In-silico study of single-strand DNA aptamers against cortisol as a potential biomarker receptor in therapeutics and diagnostics<\/a><\/li>\n\n\n\n
              7. The assessment of three dimensional modelling design for single strand DNA aptamers for computational chemistry application<\/a><\/li>\n\n\n\n
              8. Biodegradation of 3-chloropropionic acid (3-CP) by Bacillus cereus<\/em> WH2 and its in silico<\/em> enzyme-substrate docking analysis<\/a><\/li>\n<\/ol>\n\n\n\n

                2019<\/p>\n\n\n\n

                  \n
                1. In silico screening of aptamers configuration against hepatitis B surface antigen<\/a><\/li>\n<\/ol>\n\n\n\n

                  <\/p>\n\n\n\n

                  <\/p>\n","protected":false},"excerpt":{"rendered":"

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